No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes
Rankinen T, Fuku N, Wolfarth B, Wang G, Sarzynski MA, Eynon N, Lucia A, Pitsiladis YP, Bouchard C (GAMES Consortium) · 2016
grade Breplicationindependentfailednumbers spot-checked
Sample
1,520 endurance athletes (835 World Champs/Olympic) + 2,760 controls, 9 cohorts
Population
Elite endurance athletes and ethnicity-matched controls: Australia, Ethiopia, Japan, Kenya, Poland, Russia, Spain, US
Design
Two-stage case-control design: discovery in two cohorts, prespecified replication in seven. Largest elite-endurance genomic sample assembled; the null is informative but cannot exclude many small-effect alleles. The two discovery cohorts used different platforms and were run independently before GAMES existed (GENATHLETE on the Illumina CardioMetabochip, ~143,000 QC-passing SNPs, which is targeted cardiometabolic coverage rather than a full genome scan; the Japanese cohort on HumanOmniExpress, 541,179 autosomal SNPs). Discovery power was weak by design: 80% power to detect odds ratios of only 2.7/2.1 (GENATHLETE) and 6.1/4.5 (Japan) at MAF 0.1/0.3 and alpha 5x10-8. Replication genotyping was analysed centrally at Pennington. Control groups were not uniform — general-population or recreationally active in some cohorts, confirmed sedentary in others. Two internal inconsistencies to note: the paper says 1,045 (69%) of athletes were world-class in the text but 835 in the abstract and Table 1, and reports the discovery-excluded meta p-value for rs558129 as 0.0019 in Results and 0.0071 in Discussion. Competing interest: senior author C. Bouchard sat on the science advisory board of Pathway Genomics (2011-2014) — a direct-to-consumer genetic testing firm — though the reported null runs against that interest.
Key findings
Discovery GWAS (GENATHLETE + Japanese runners) produced no genome-wide-significant hits at all (p < 5x10-8) in either cohort, and there was no overlap between the two cohorts' top SNPs; 45 markers at p < 1x10-4 were carried forward. In the prespecified replication cohorts, no marker survived multiple-testing correction — not in the four European cohorts, not in the two African cohorts (where the strongest Kenyan hits pointed in the OPPOSITE direction in Ethiopians). Conclusion stands: "no panel of genomic variants common to these elite endurance athlete groups", and "common genetic variants do not appear to be strong determinants of elite endurance athlete status". Heritable does not mean genotype-predictable: DNA-based talent identification is unsupported. Two corrections to the previous abstract-level record. (1) The null is not absolute — pooling all 8 available cohorts, ONE marker (rs558129 at GALNTL6) did survive Bonferroni correction (OR 0.81, p = 0.0002, I2 = 0, same direction in every cohort), and the paper's own summary reports it. It was only nominal (p = 0.04) when restricted to world-class athletes, and no other SNP survived. (2) The strongest result for the archive's purposes is not in the old record at all: the classic candidate genes failed outright. ACTN3, CKM and GNB3 showed no association in any cohort or meta-analysis, and none of 161 SNPs across 13 named endurance candidate genes (including ACE, ACTN3, NOS3, PPARA, PPARGC1A, ADRB2, AMPD1) reached the Bonferroni threshold of p = 3.5x10-7.
Genetic confound
Molecular counterpart to pedigree/twin estimates: high familial h2 with no replicable loci, consistent with extreme polygenicity plus ethnic stratification.
Replication notes
"failed" is scoped to the prespecified replication phase: none of the 45 discovery leads survived multiple-testing correction in the seven replication cohorts, and directionally inconsistent nominal hits (rs7947391 across Australia/Poland/Spain; Kenya vs Ethiopia) are the signature of noise rather than of underpowered truth. This study is itself a failed replication of the prior candidate-gene literature (ACTN3, ACE, PPARGC1A and 10 other named genes). The single surviving pooled-meta marker (rs558129, GALNTL6) is a NEW discovery from the combined sample, not a replicated one, and has not to this record's knowledge been independently confirmed since.
Effects
| Outcome | Metric | Value | Measure | Timing | Vs | Horizon | Class |
|---|---|---|---|---|---|---|---|
| Genome-wide significant hits in the two discovery GWAS | SNPs at p < 5x10-8 | zero, in both GENATHLETE (315 athletes / 320 controls, ~143,000 SNPs) and the Japanese cohort (60 athletes / 116 controls, 541,179 SNPs). No overlap between the two cohorts' top SNPs. 45 markers at p < 1x10-4 were carried forward as leads | standardized | cross-sectional, adult elite athletes | none | not-applicable | health |
| Replication of the 45 candidate markers in the prespecified replication cohorts | markers surviving multiple-testing correction | zero. In the four European replication cohorts (42 SNPs testable) none reached Bonferroni significance; 5 were nominally significant in Australians, 5 in Russians, and the one SNP nominal in three cohorts (rs7947391) had OPPOSITE effect directions between them. In the African cohorts none survived correction and the top Kenyan SNPs reversed direction in Ethiopians | standardized | cross-sectional, adult elite athletes | none | not-applicable | health |
| Pooled meta-analysis across all cohorts (the one positive finding) | SNPs surviving Bonferroni correction | ONE: rs558129 in the last intron of GALNTL6 (chr 4q34.1), OR 0.81, p = 0.0002 against a Bonferroni threshold of 0.0011, I2 = 0, same direction of effect in all 8 cohorts (Table 7). Persisted when the discovery cohorts were removed (p = 0.0019 per Results, 0.0071 per Discussion). Dropped to nominal (p = 0.037) when restricted to world-class athletes only. The paper's summary states it explicitly: "we found that the T allele in GALNTL6 was less frequent in endurance athletes... However, we could not find evidence for a detailed genomic signature that differentiates endurance athletes from controls" | standardized | cross-sectional, adult elite athletes | none | not-applicable | health |
| The classic endurance candidate genes | SNPs surviving Bonferroni correction | zero. ACTN3, CKM and GNB3 — selected on the basis of prior positive results in Japanese endurance athletes — showed no association in any cohort or in any meta-analysis. Of 161 SNPs across 13 named endurance candidate genes (ACE, ACSL1, ACTN3, ADRB1, ADRB2, AMPD1, BDKRB2, GH1, IL6, KDR, NOS3, PPARA, PPARGC1A) genotyped in GENATHLETE, none reached the Bonferroni threshold of p = 3.5x10-7; the best were two SNPs near PPARGC1A at p ~ 0.0012, and none came close when restricted to world-class athletes | standardized | cross-sectional, adult elite athletes | none | not-applicable | health |
| Power to detect small-effect alleles | study power | underpowered for small effects; only suggestive leads remain for future study. Discovery cohorts had 80% power only for odds ratios of 2.7 and 2.1 (GENATHLETE, MAF 0.1 and 0.3) and 6.1 and 4.5 (Japan) at genome-wide alpha. The authors state adequate power will require federation/IOC cooperation to enrol thousands of world-class athletes | standardized | cross-sectional | none | not-applicable | health |
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